PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02480-abinit-gene-0.3-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 234aa    MW: 25392.1 Da    PI: 6.5262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02480-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.57e-1377121655
                                                   AP2   6 VrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                              ++++g+Wv+eIr p+    + +r++lg++ t ++Aa a++ a+++l+g
  augustus_masked-scaffold02480-abinit-gene-0.3-mRNA-1  77 A--RSRSGKWVSEIRQPR----KaTRIWLGTYPTQDMAATAYDVAALALKG 121
                                                           5..5789*********84....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.03E-2572131No hitNo description
SuperFamilySSF541711.63E-1673130IPR016177DNA-binding domain
SMARTSM003804.2E-2473135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2473130IPR001471AP2/ERF domain
PROSITE profilePS5103219.61273129IPR001471AP2/ERF domain
PfamPF008471.7E-778121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAKNPSNVRR NNPYRTTNVR REETTLNSHT TATISTSSST ITTATSPISV SEGFSGQTGS  60
SPSSSSTTTK HKKFRGARSR SGKWVSEIRQ PRKATRIWLG TYPTQDMAAT AYDVAALALK  120
GPDTVLNFPD LILWYPIPLS TSPVDIRAAA ACAAEAMMER SSESGSAFHG ATHLRRSDED  180
YFIDEEELLN MPSLLVNMAE GMLLTPPRIQ SKSSSDESGG DENGDGDGLW SYAY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010662529.14e-56PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9FJ903e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLF6HP684e-56F6HP68_VITVI; Putative uncharacterized protein
STRINGVIT_16s0100g00400.t011e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-35ERF family protein